| compute_linkage_groups | Compute Linkage groups | 
| compute_macrosynteny | Compute significant macrosynteny blocks | 
| get_syntenic_genes | get the syntenic genes as a table | 
| load_orthologs | load orthologs with their genomic coordinates. | 
| plot_chord_diagram | plot the Macro-synteny as a chord diagram | 
| plot_macrosynteny | Plot Macro-synteny | 
| plot_oxford_grid | plot the Macro-synteny as an oxford grid. | 
| reorder_macrosynteny | Reorder the mbh_df before plotting | 
| reorder_multiple_macrosyntenies | Reorder the chromosomes of two or more species before plotting | 
| reverse_species_order | Reverse order of the species in an orthologs_df. | 
| subset_linkage_orthologs | Subset Orthologs contained in conserved linkage groups |