Last updated on 2025-09-29 01:49:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.0 | 12.85 | 229.21 | 242.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.0 | 8.44 | 165.40 | 173.84 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.0 | 367.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0.0 | 353.99 | OK | |||
| r-devel-windows-x86_64 | 3.0.0 | 19.00 | 279.00 | 298.00 | OK | |
| r-patched-linux-x86_64 | 3.0.0 | 14.39 | 213.55 | 227.94 | OK | |
| r-release-linux-x86_64 | 3.0.0 | 10.34 | 211.87 | 222.21 | OK | |
| r-release-macos-arm64 | 3.0.0 | 149.00 | OK | |||
| r-release-macos-x86_64 | 3.0.0 | 126.00 | OK | |||
| r-release-windows-x86_64 | 3.0.0 | 15.00 | 280.00 | 295.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.0 | 141.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 3.0.0 | 137.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 3.0.0 | 23.00 | 332.00 | 355.00 | ERROR |
Version: 3.0.0
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [120s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eyeris)
eyeris v3.0.0 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶
Welcome! Type ?`eyeris` to get started.
>
> test_check("eyeris")
i [2025-09-26 09:23:39] [INFO] Created output directory:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_chunked_output
v [2025-09-26 09:23:39] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/bids_test/derivatives/test-db.eyerisdb
i [2025-09-26 09:23:39] [INFO] Exporting data types: confounds_summary
i [2025-09-26 09:23:39] [INFO] Processing data type: confounds_summary
i [2025-09-26 09:23:39] [INFO] Grouping tables by epoch label...
i [2025-09-26 09:23:39] [INFO] Found 1 epoch label groups for
confounds_summary: _nolabel
i [2025-09-26 09:23:39] [INFO] Analyzing column structures within epoch group
'_nolabel'...
i [2025-09-26 09:23:39] [INFO] Found 2 column-compatible groups within
'_nolabel': goal, stim
i [2025-09-26 09:23:39] [INFO] Processing confounds_summary group 'goal' (2
tables)
i [2025-09-26 09:23:39] [INFO] Using chunked processing (file size limit = 50MB
< 500MB threshold)
i [2025-09-26 09:23:39] [INFO] Processing with file size chunking enabled
i [2025-09-26 09:23:39] [INFO] Starting chunked query processing (chunk size:
50)
i [2025-09-26 09:23:39] [INFO] Query: SELECT * FROM
"confounds_summary_01_task_run01_goal" UNION ALL SELECT * FROM
"confounds_summary_02_task_run01_goal"
i [2025-09-26 09:23:39] [INFO] Processing chunk 1: 50 rows
i [2025-09-26 09:23:39] [INFO] Created output file:
test-db_confounds_summary_goal_chunked_01.csv
i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 50 rows
i [2025-09-26 09:23:40] [INFO] Processing chunk 3: 50 rows
i [2025-09-26 09:23:40] [INFO] No more data to process
v [2025-09-26 09:23:40] [OKAY] Chunked processing complete:
i [2025-09-26 09:23:40] [INFO] Total rows: 150
i [2025-09-26 09:23:40] [INFO] Chunks: 3
i [2025-09-26 09:23:40] [INFO] Processing time: 0 seconds
i [2025-09-26 09:23:40] [INFO] Average rate: 4009 rows/second
i [2025-09-26 09:23:40] [INFO] Processing confounds_summary group 'stim' (1
tables)
i [2025-09-26 09:23:40] [INFO] Using chunked processing (file size limit = 50MB
< 500MB threshold)
i [2025-09-26 09:23:40] [INFO] Processing with file size chunking enabled
i [2025-09-26 09:23:40] [INFO] Starting chunked query processing (chunk size:
50)
i [2025-09-26 09:23:40] [INFO] Query: SELECT * FROM
"confounds_summary_01_task_run01_stim"
i [2025-09-26 09:23:40] [INFO] Processing chunk 1: 50 rows
i [2025-09-26 09:23:40] [INFO] Created output file:
test-db_confounds_summary_stim_chunked_01.csv
i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 50 rows
i [2025-09-26 09:23:40] [INFO] No more data to process
v [2025-09-26 09:23:40] [OKAY] Chunked processing complete:
i [2025-09-26 09:23:40] [INFO] Total rows: 100
i [2025-09-26 09:23:40] [INFO] Chunks: 2
i [2025-09-26 09:23:40] [INFO] Processing time: 0 seconds
i [2025-09-26 09:23:40] [INFO] Average rate: 3202 rows/second
v [2025-09-26 09:23:40] [OKAY] Export complete!
i [2025-09-26 09:23:40] [INFO] Data types exported: 2
i [2025-09-26 09:23:40] [INFO] Total rows exported: 250
i [2025-09-26 09:23:40] [INFO] Output directory:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_chunked_output
i [2025-09-26 09:23:40] [INFO] Disconnected from eyeris database
i [2025-09-26 09:23:40] [INFO] Created output directory:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/size_test_output
v [2025-09-26 09:23:40] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/bids_size_test/derivatives/size-test.eyerisdb
i [2025-09-26 09:23:40] [INFO] Exporting data types: timeseries
i [2025-09-26 09:23:40] [INFO] Processing data type: timeseries
i [2025-09-26 09:23:40] [INFO] Processing timeseries group 'all' (1 tables)
i [2025-09-26 09:23:40] [INFO] Using chunked processing (file size limit =
0.05MB < 500MB threshold)
i [2025-09-26 09:23:40] [INFO] Processing with file size chunking enabled
i [2025-09-26 09:23:40] [INFO] Starting chunked query processing (chunk size:
500)
i [2025-09-26 09:23:40] [INFO] Query: SELECT * FROM "timeseries_01_test_run01"
i [2025-09-26 09:23:40] [INFO] Processing chunk 1: 500 rows
i [2025-09-26 09:23:40] [INFO] Created output file:
size-test_timeseries_chunked_01.csv
i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 500 rows
i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_02.csv
i [2025-09-26 09:23:40] [INFO] Created output file:
size-test_timeseries_chunked_02.csv
i [2025-09-26 09:23:40] [INFO] Processing chunk 3: 500 rows
i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_03.csv
i [2025-09-26 09:23:40] [INFO] Created output file:
size-test_timeseries_chunked_03.csv
i [2025-09-26 09:23:40] [INFO] Processing chunk 4: 500 rows
i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_04.csv
i [2025-09-26 09:23:40] [INFO] Created output file:
size-test_timeseries_chunked_04.csv
i [2025-09-26 09:23:40] [INFO] No more data to process
v [2025-09-26 09:23:40] [OKAY] Chunked processing complete:
i [2025-09-26 09:23:40] [INFO] Total rows: 2000
i [2025-09-26 09:23:40] [INFO] Chunks: 4
i [2025-09-26 09:23:40] [INFO] Processing time: 0.2 seconds
i [2025-09-26 09:23:40] [INFO] Average rate: 12666 rows/second
i [2025-09-26 09:23:40] [INFO] Finalizing 4 output files with proper
numbering...
i [2025-09-26 09:23:40] [INFO] Renamed: size-test_timeseries_chunked_01.csv ->
size-test_timeseries_chunked_01-of-04.csv
i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_02.csv ->
size-test_timeseries_chunked_02-of-04.csv
i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_03.csv ->
size-test_timeseries_chunked_03-of-04.csv
i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_04.csv ->
size-test_timeseries_chunked_04-of-04.csv
v [2025-09-26 09:23:41] [OKAY] Export complete!
i [2025-09-26 09:23:41] [INFO] Data types exported: 1
i [2025-09-26 09:23:41] [INFO] Total rows exported: 2000
i [2025-09-26 09:23:41] [INFO] Output directory:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/size_test_output
i [2025-09-26 09:23:41] [INFO] Disconnected from eyeris database
v [2025-09-26 09:23:42] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids/derivatives/user-test.eyerisdb
i [2025-09-26 09:23:42] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002'
i [2025-09-26 09:23:42] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002'
AND session_id = '02' AND task_name = 'memory'
i [2025-09-26 09:23:42] [INFO] Disconnected from eyeris database
i [2025-09-26 09:23:45] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epoch_timeseries_005_01_epochtest_run01_prepostprobe") as combined_data WHERE
1=1 AND subject_id = '005'
v [2025-09-26 09:23:46] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:23:46] [INFO] Processing block: block_1
v [2025-09-26 09:23:46] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:23:46] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:23:47] [OKAY] Running eyeris::interpolate() for block_1
v [2025-09-26 09:23:47] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:23:47] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:23:47] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:23:47] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:23:47] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:23:47] [INFO] Block processing summary:
i [2025-09-26 09:23:47] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:23:47] [OKAY] Running eyeris::summarize_confounds()
i [2025-09-26 09:23:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:55] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:56] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:57] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:58] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:58] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:23:59] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:00] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:01] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:02] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-09-26 09:24:10] [WARN] No detrend data found for run-01
processing file: sub-001.Rmd
output file: sub-001.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-001.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-001.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313282ece5415.html"
File not found in resource path
v [2025-09-26 09:24:12] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:24:12] [INFO] Processing block: block_1
v [2025-09-26 09:24:12] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:24:12] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:24:12] [OKAY] Running eyeris::interpolate() for block_1
v [2025-09-26 09:24:13] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:24:13] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:24:13] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:24:13] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:24:13] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:24:13] [INFO] Block processing summary:
i [2025-09-26 09:24:13] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:24:13] [OKAY] Running eyeris::summarize_confounds()
i [2025-09-26 09:24:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:19] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:20] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:21] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:22] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:26] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:29] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-09-26 09:24:35] [WARN] No detrend data found for run-01
processing file: sub-002.Rmd
output file: sub-002.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-002.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-002.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313287826548b.html"
File not found in resource path
v [2025-09-26 09:24:36] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:24:36] [INFO] Processing block: block_1
v [2025-09-26 09:24:36] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:24:36] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:24:36] [OKAY] Running eyeris::interpolate() for block_1
v [2025-09-26 09:24:36] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:24:36] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:24:36] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:24:36] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:24:36] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:24:36] [INFO] Block processing summary:
i [2025-09-26 09:24:36] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:24:36] [OKAY] Running eyeris::summarize_confounds()
i [2025-09-26 09:24:38] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:39] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:40] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:41] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:42] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:43] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:48] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:24:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-09-26 09:24:59] [WARN] No detrend data found for run-01
processing file: sub-003.Rmd
output file: sub-003.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-003.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-003.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313281e6f8cd.html"
File not found in resource path
v [2025-09-26 09:25:00] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:25:00] [INFO] Processing block: block_1
v [2025-09-26 09:25:00] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:25:00] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:25:00] [OKAY] Running eyeris::interpolate() for block_1
v [2025-09-26 09:25:00] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:25:00] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:25:00] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:25:00] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:25:00] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:25:00] [INFO] Block processing summary:
i [2025-09-26 09:25:00] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:25:00] [OKAY] Running eyeris::summarize_confounds()
i [2025-09-26 09:25:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:08] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:10] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-09-26 09:25:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-09-26 09:25:23] [WARN] No detrend data found for run-01
processing file: sub-004.Rmd
output file: sub-004.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-004.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-004.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313287452166e.html"
File not found in resource path
i [2025-09-26 09:25:25] [INFO] Disconnected from eyeris database
v [2025-09-26 09:25:26] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids/derivatives/test-study.eyerisdb
i [2025-09-26 09:25:26] [INFO] Disconnected from eyeris database
i [2025-09-26 09:25:26] [INFO] Disconnected from eyeris database
v [2025-09-26 09:25:27] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_read/derivatives/read-test.eyerisdb
i [2025-09-26 09:25:27] [INFO] Disconnected from eyeris database
i [2025-09-26 09:25:27] [INFO] Disconnected from eyeris database
v [2025-09-26 09:25:27] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_size/derivatives/size-test.eyerisdb
i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database
i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database
v [2025-09-26 09:25:28] [OKAY] Connected to eyeris database:
D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_empty/derivatives/empty-test.eyerisdb
! [2025-09-26 09:25:28] [WARN] No valid tables found in database (after
excluding temp tables)
i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database
v [2025-09-26 09:25:28] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:25:29] [INFO] Processing block: block_1
v [2025-09-26 09:25:29] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:25:29] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:25:29] [OKAY] Running eyeris::interpolate() for block_1
v [2025-09-26 09:25:29] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:25:29] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:25:29] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:25:29] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:25:29] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:25:29] [INFO] Block processing summary:
i [2025-09-26 09:25:29] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:25:29] [OKAY] Running eyeris::summarize_confounds()
v [2025-09-26 09:25:29] [OKAY] Running eyeris::load_asc()
i [2025-09-26 09:25:30] [INFO] Binocular data detected. Processing average
mode.
i [2025-09-26 09:25:30] [INFO] Processing block: block_1
v [2025-09-26 09:25:30] [OKAY] Running eyeris::deblink() for block_1
v [2025-09-26 09:25:30] [OKAY] Running eyeris::detransient() for block_1
v [2025-09-26 09:25:30] [OKAY] Running eyeris::interpolate() for block_1
! [2025-09-26 09:25:30] [WARN] No NAs detected in pupil data... Skipping
interpolation!
v [2025-09-26 09:25:30] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-09-26 09:25:30] [WARN] Skipping eyeris::downsample() for block_1
! [2025-09-26 09:25:30] [WARN] Skipping eyeris::bin() for block_1
! [2025-09-26 09:25:30] [WARN] Skipping eyeris::detrend() for block_1
v [2025-09-26 09:25:30] [OKAY] Running eyeris::zscore() for block_1
i [2025-09-26 09:25:30] [INFO] Block processing summary:
i [2025-09-26 09:25:30] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-09-26 09:25:30] [OKAY] Running eyeris::summarize_confounds()
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-parallel-database.R:10:7'): manual parallel processing flag enables temporary databases ──
Expected `{ ... }` to run without any errors.
i Actually got a <simpleError> with text:
pandoc document conversion failed with error 99
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5
── Failure ('test-parallel-database.R:32:7'): SLURM environment variables are detected for parallel processing ──
Expected `{ ... }` to run without any errors.
i Actually got a <simpleError> with text:
pandoc document conversion failed with error 99
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5
── Failure ('test-parallel-database.R:52:7'): PBS environment variables are detected for parallel processing ──
Expected `{ ... }` to run without any errors.
i Actually got a <simpleError> with text:
pandoc document conversion failed with error 99
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5
── Failure ('test-parallel-database.R:71:5'): normal database operation works without parallel processing ──
Expected `{ ... }` to run without any errors.
i Actually got a <simpleError> with text:
pandoc document conversion failed with error 99
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64