Last updated on 2025-09-07 01:48:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.18.0 | 38.38 | 216.44 | 254.82 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.18.0 | 26.54 | 164.37 | 190.91 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.18.0 | 448.38 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.18.0 | 425.19 | OK | |||
| r-devel-windows-x86_64 | 3.18.0 | 43.00 | 243.00 | 286.00 | ERROR | |
| r-patched-linux-x86_64 | 3.18.0 | 41.26 | 235.30 | 276.56 | OK | |
| r-release-linux-x86_64 | 3.18.0 | 35.00 | 237.70 | 272.70 | OK | |
| r-release-macos-arm64 | 3.18.0 | 110.00 | OK | |||
| r-release-macos-x86_64 | 3.18.0 | 182.00 | OK | |||
| r-release-windows-x86_64 | 3.18.0 | 42.00 | 295.00 | 337.00 | OK | |
| r-oldrel-macos-arm64 | 3.18.0 | 110.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.18.0 | 183.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.18.0 | 56.00 | 376.00 | 432.00 | OK |
Version: 3.18.0
Check: examples
Result: ERROR
Running examples in ‘mice-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: D3
> ### Title: Compare two nested models using D3-statistic
> ### Aliases: D3
>
> ### ** Examples
>
> # Compare two linear models:
> imp <- mice(nhanes2, seed = 51009, print = FALSE)
> mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl))
> mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp))
> D3(mi1, mi0)
Error in ll(object) : could not find function "ll"
Calls: D3 ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.18.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mice)
Attaching package: 'mice'
The following object is masked from 'package:stats':
filter
The following objects are masked from 'package:base':
cbind, rbind
>
> test_check("mice")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-D3.R:23:1'): (code run outside of `test_that()`) ───────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─mice::D3(fit1 = fit1, fit0 = fit0) at test-D3.R:23:1
2. │ ├─lapply(fit1, glance) %>% bind_rows() %>% pull(.data$logLik)
3. │ └─base::lapply(fit1, glance)
4. │ ├─generics (local) FUN(X[[i]], ...)
5. │ └─broom:::glance.lm(X[[i]], ...)
6. │ ├─base::with(...)
7. │ └─base::with.default(...)
8. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─tibble::tibble(...)
11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
12. │ └─rlang::eval_tidy(xs[[j]], mask)
13. ├─dplyr::pull(., .data$logLik)
14. ├─dplyr::bind_rows(.)
15. │ └─rlang::list2(...)
16. ├─stats::AIC(x)
17. └─stats:::AIC.default(x)
── Error ('test-anova.R:9:3'): anova.mira() produces silent D1 and D3 ──────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─testthat::expect_silent(z1 <- anova(m2, m1, m0)) at test-anova.R:9:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─stats::anova(m2, m1, m0)
10. ├─mice:::anova.mira(m2, m1, m0)
11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)
12. ├─base::sapply(., glance)
13. │ └─base::lapply(X = X, FUN = FUN, ...)
14. │ ├─generics (local) FUN(X[[i]], ...)
15. │ └─broom:::glance.lm(X[[i]], ...)
16. │ ├─base::with(...)
17. │ └─base::with.default(...)
18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
20. │ └─tibble::tibble(...)
21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
22. │ └─rlang::eval_tidy(xs[[j]], mask)
23. ├─stats::AIC(x)
24. └─stats:::AIC.default(x)
── Error ('test-anova.R:14:3'): anova.mira() produces silent with D2 ───────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─testthat::expect_silent(z2a <- anova(m2, m1, m0, method = "D2")) at test-anova.R:14:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─stats::anova(m2, m1, m0, method = "D2")
10. ├─mice:::anova.mira(m2, m1, m0, method = "D2")
11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)
12. ├─base::sapply(., glance)
13. │ └─base::lapply(X = X, FUN = FUN, ...)
14. │ ├─generics (local) FUN(X[[i]], ...)
15. │ └─broom:::glance.lm(X[[i]], ...)
16. │ ├─base::with(...)
17. │ └─base::with.default(...)
18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
20. │ └─tibble::tibble(...)
21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
22. │ └─rlang::eval_tidy(xs[[j]], mask)
23. ├─stats::AIC(x)
24. └─stats:::AIC.default(x)
── Error ('test-pool.r.squared.R:9:3'): pool.r.squared mira ────────────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─base::as.vector(...) at test-pool.r.squared.R:9:3
2. ├─mice::pool.r.squared(fit_mira, adjusted = FALSE)
3. │ ├─base::summary(object, type = "glance")
4. │ └─mice:::summary.mira(object, type = "glance")
5. │ ├─lapply(fitlist, glance, ...) %>% bind_rows()
6. │ └─base::lapply(fitlist, glance, ...)
7. │ ├─generics (local) FUN(X[[i]], ...)
8. │ └─broom:::glance.lm(X[[i]], ...)
9. │ ├─base::with(...)
10. │ └─base::with.default(...)
11. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
12. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
13. │ └─tibble::tibble(...)
14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
15. │ └─rlang::eval_tidy(xs[[j]], mask)
16. ├─dplyr::bind_rows(.)
17. │ └─rlang::list2(...)
18. ├─stats::AIC(x)
19. └─stats:::AIC.default(x)
── Error ('test-pool.r.squared.R:14:3'): r.squared mipo ────────────────────────
Error in `if (nrow(object$glanced) < 2) {
stop("At least two imputations are needed for pooling.\n")
}`: argument is of length zero
Backtrace:
▆
1. ├─base::as.vector(...) at test-pool.r.squared.R:14:3
2. └─mice::pool.r.squared(fit_mipo, adjusted = FALSE)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.18.0
Check: examples
Result: ERROR
Running examples in 'mice-Ex.R' failed
The error most likely occurred in:
> ### Name: D3
> ### Title: Compare two nested models using D3-statistic
> ### Aliases: D3
>
> ### ** Examples
>
> # Compare two linear models:
> imp <- mice(nhanes2, seed = 51009, print = FALSE)
> mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl))
> mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp))
> D3(mi1, mi0)
Error in ll(object) : could not find function "ll"
Calls: D3 ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default
Execution halted
Flavor: r-devel-windows-x86_64
Version: 3.18.0
Check: tests
Result: ERROR
Running 'testthat.R' [67s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mice)
Attaching package: 'mice'
The following object is masked from 'package:stats':
filter
The following objects are masked from 'package:base':
cbind, rbind
>
> test_check("mice")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-D3.R:23:1'): (code run outside of `test_that()`) ───────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─mice::D3(fit1 = fit1, fit0 = fit0) at test-D3.R:23:1
2. │ ├─lapply(fit1, glance) %>% bind_rows() %>% pull(.data$logLik)
3. │ └─base::lapply(fit1, glance)
4. │ ├─generics (local) FUN(X[[i]], ...)
5. │ └─broom:::glance.lm(X[[i]], ...)
6. │ ├─base::with(...)
7. │ └─base::with.default(...)
8. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─tibble::tibble(...)
11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
12. │ └─rlang::eval_tidy(xs[[j]], mask)
13. ├─dplyr::pull(., .data$logLik)
14. ├─dplyr::bind_rows(.)
15. │ └─rlang::list2(...)
16. ├─stats::AIC(x)
17. └─stats:::AIC.default(x)
── Error ('test-anova.R:9:3'): anova.mira() produces silent D1 and D3 ──────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─testthat::expect_silent(z1 <- anova(m2, m1, m0)) at test-anova.R:9:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─stats::anova(m2, m1, m0)
10. ├─mice:::anova.mira(m2, m1, m0)
11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)
12. ├─base::sapply(., glance)
13. │ └─base::lapply(X = X, FUN = FUN, ...)
14. │ ├─generics (local) FUN(X[[i]], ...)
15. │ └─broom:::glance.lm(X[[i]], ...)
16. │ ├─base::with(...)
17. │ └─base::with.default(...)
18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
20. │ └─tibble::tibble(...)
21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
22. │ └─rlang::eval_tidy(xs[[j]], mask)
23. ├─stats::AIC(x)
24. └─stats:::AIC.default(x)
── Error ('test-anova.R:14:3'): anova.mira() produces silent with D2 ───────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─testthat::expect_silent(z2a <- anova(m2, m1, m0, method = "D2")) at test-anova.R:14:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─stats::anova(m2, m1, m0, method = "D2")
10. ├─mice:::anova.mira(m2, m1, m0, method = "D2")
11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)
12. ├─base::sapply(., glance)
13. │ └─base::lapply(X = X, FUN = FUN, ...)
14. │ ├─generics (local) FUN(X[[i]], ...)
15. │ └─broom:::glance.lm(X[[i]], ...)
16. │ ├─base::with(...)
17. │ └─base::with.default(...)
18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
20. │ └─tibble::tibble(...)
21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
22. │ └─rlang::eval_tidy(xs[[j]], mask)
23. ├─stats::AIC(x)
24. └─stats:::AIC.default(x)
── Error ('test-pool.r.squared.R:9:3'): pool.r.squared mira ────────────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─base::as.vector(...) at test-pool.r.squared.R:9:3
2. ├─mice::pool.r.squared(fit_mira, adjusted = FALSE)
3. │ ├─base::summary(object, type = "glance")
4. │ └─mice:::summary.mira(object, type = "glance")
5. │ ├─lapply(fitlist, glance, ...) %>% bind_rows()
6. │ └─base::lapply(fitlist, glance, ...)
7. │ ├─generics (local) FUN(X[[i]], ...)
8. │ └─broom:::glance.lm(X[[i]], ...)
9. │ ├─base::with(...)
10. │ └─base::with.default(...)
11. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
12. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
13. │ └─tibble::tibble(...)
14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
15. │ └─rlang::eval_tidy(xs[[j]], mask)
16. ├─dplyr::bind_rows(.)
17. │ └─rlang::list2(...)
18. ├─stats::AIC(x)
19. └─stats:::AIC.default(x)
── Error ('test-pool.r.squared.R:14:3'): r.squared mipo ────────────────────────
Error in `if (nrow(object$glanced) < 2) {
stop("At least two imputations are needed for pooling.\n")
}`: argument is of length zero
Backtrace:
▆
1. ├─base::as.vector(...) at test-pool.r.squared.R:14:3
2. └─mice::pool.r.squared(fit_mipo, adjusted = FALSE)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64