Last updated on 2025-08-27 01:50:34 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/131s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.720, system: 0.090, elapsed: 2.237 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.175, system: 0.179, elapsed: 13.603 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.013, elapsed: 0.279 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.681, system: 0.192, elapsed: 4.982 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.009, elapsed: 0.247 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.474, system: 0.511, elapsed: 22.147 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.631, system: 0.075, elapsed: 1.972 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.427, system: 0.370, elapsed: 14.557 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.015, elapsed: 0.278 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.918, system: 0.274, elapsed: 5.298 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.008, elapsed: 0.207 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.880, system: 0.772, elapsed: 23.083 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.810, system: 0.100, elapsed: 2.725 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.022, system: 0.073, elapsed: 22.465 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.012, elapsed: 0.502 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.764, system: 0.184, elapsed: 9.139 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.343 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.165, system: 0.209, elapsed: 1.359 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.733, system: 0.611, elapsed: 37.700 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.450, system: 0.030, elapsed: 2.379 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.100, system: 0.054, elapsed: 13.891 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.015, elapsed: 0.290 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.799, system: 0.192, elapsed: 6.081 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.254 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.447, system: 0.490, elapsed: 16.622 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.821, system: 0.815, elapsed: 40.653 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.041, elapsed: 2.285 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.924, system: 0.078, elapsed: 12.400 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.263 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.535, system: 0.181, elapsed: 4.915 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.214 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.875, system: 0.340, elapsed: 20.875 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.552, system: 0.044, elapsed: 2.281 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.894, system: 0.095, elapsed: 12.683 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.176, system: 0.010, elapsed: 0.239 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.646, system: 0.172, elapsed: 5.348 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.298 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.969, system: 0.354, elapsed: 21.610 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.032, elapsed: 2.330 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.941, system: 0.118, elapsed: 12.954 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.011, elapsed: 0.227 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.588, system: 0.175, elapsed: 4.725 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.015, elapsed: 0.235 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.020, system: 0.223, elapsed: 0.871 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.031, system: 0.604, elapsed: 22.249 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.434, system: 0.028, elapsed: 1.896 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.970, system: 0.084, elapsed: 12.053 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.011, elapsed: 0.251 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.585, system: 0.161, elapsed: 5.270 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.288 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.095, system: 0.473, elapsed: 15.685 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.062, system: 0.788, elapsed: 36.321 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64