MicrobTiSDA: Microbiome Time-Series Data Analysis

Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.

Version: 0.1.0
Depends: R (≥ 3.5)
Imports: caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv, plyr, pracma, randomForest, reshape2, scales, splines, stats, tibble, tidygraph, tidyr, vegan, visNetwork
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2025-09-22
DOI: 10.32614/CRAN.package.MicrobTiSDA
Author: Shijia Li ORCID iD [aut, cre]
Maintainer: Shijia Li <s.li2 at uva.nl>
BugReports: https://github.com/Lishijiagg/MicrobTiSDA/issues
License: MIT + file LICENSE
URL: https://github.com/Lishijiagg/MicrobTiSDA
NeedsCompilation: no
Materials: README
CRAN checks: MicrobTiSDA results

Documentation:

Reference manual: MicrobTiSDA.html , MicrobTiSDA.pdf
Vignettes: MicrobTiSDA (source, R code)

Downloads:

Package source: MicrobTiSDA_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): MicrobTiSDA_0.1.0.tgz, r-oldrel (x86_64): MicrobTiSDA_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MicrobTiSDA to link to this page.