mclink: Metabolic Pathway Completeness and Abundance Calculation
Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.
| Version: | 1.1 |
| Depends: | R (≥ 3.5) |
| Imports: | data.table (≥ 1.17.0), dplyr (≥ 1.1.4), stringr (≥ 1.5.1), tibble (≥ 3.2.1), utils |
| Published: | 2025-08-22 |
| DOI: | 10.32614/CRAN.package.mclink |
| Author: | Liuyang Li  [aut,
cre] |
| Maintainer: | Liuyang Li <cyanobacteria at yeah.net> |
| BugReports: | https://github.com/LiuyangLee/mclink/issues |
| License: | GPL-3 |
| URL: | https://github.com/LiuyangLee/mclink |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | mclink results |
Documentation:
| Reference manual: | mclink.html , mclink.pdf |
Downloads:
| Package source: | mclink_1.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Linking:
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