add |
Create function that adds text elements to vector |
addEVID2 |
Add simulation records to dosing records |
addResVar |
Add residual variability based on parameter estimates |
as.NMctl |
Convert object to class NMctl |
cbind.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
cbind.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
dimnames.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
dimnames.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
expandCovs |
Create data set where each covariate is univariately varied (see 'forestDefineCovs()') |
forestDefineCovs |
Create data set where each covariate is univariately varied |
forestSummarize |
Summarize simulated exposures relative to reference subject |
genPhiFile |
Generate a .phi file for further simulation with Nonmem |
inputArchiveDefault |
Default location of input archive file |
is.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
is.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
merge.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
merge.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
modTab |
Get NMsim model metadata |
NMaddSamples |
Add simulation (sample) records to dosing records |
NMcreateDoses |
Easily and flexibly generate dosing records |
NMexec |
Execute Nonmem and archive input data with model files |
NMreadSim |
Read simulation results based on NMsim's track of model runs |
NMsim |
Simulate from an estimated Nonmem model |
NMsimModTabOperations |
Remove NMsimModTab class and discard NMsimModTab meta data |
NMsimResOperations |
Remove NMsimRes class and discard NMsimRes meta data |
NMsimTestConf |
Summarize and test NMsim configuration |
NMsim_asis |
Simulation method that uses the provided control stream as is |
NMsim_default |
Transform an estimated Nonmem model into a simulation control stream |
NMsim_EBE |
Use emperical Bayes estimates to simulate re-using ETAs |
NMsim_NWPRI |
Simulate with parameter variability using the NONMEM NWPRI subroutine |
NMsim_typical |
Typical subject simiulation method |
NMsim_VarCov |
Simulate with parameter values sampled from a covariance step |
NMwriteInits |
Writes a parameter values to a control stream |
NMwriteSizes |
Create or update $SIZES in a control stream |
overwrite |
Create function that modifies text elements in a vector Namely used to feed functions to modify control streams using 'NMsim()' arguments such as 'modify'. Those functions are often onveniently passed a function. 'add' and 'overwrite' are simple shortcuts to creating such functions. Make sure to see examples. |
print.summary_NMsimRes |
print method for NMsimRes summaries |
rbind.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
rbind.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
readCtl |
Read as class NMctl |
readParsWide |
Parameter data from csv |
sampleCovs |
Sample subject-level covariates from an existing data set |
samplePars |
Sample model parameters using 'mvrnorm' or the 'simpar' package |
sampleParsSimpar |
Sample model parameters using the 'simpar' package |
simPopEtas |
Generate a population based on a Nonmem model |
summarizeCovs |
Summarize simulated exposures relative to reference subject (see 'forestSummarize()') |
summary.NMsimRes |
summary method for NMsim results (NMsimRes objects) |
t.NMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
t.NMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |
unNMsimModTab |
Remove NMsimModTab class and discard NMsimModTab meta data |
unNMsimRes |
Remove NMsimRes class and discard NMsimRes meta data |