Native Access Medical Record Retriever for High Yield Analytics

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Documentation for package ‘naryn’ version 2.6.30

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D E H M N S V W Y

naryn-package Toolkit for medical records data analysis

-- D --

day Convert time periods to internal time format
days Convert time periods to internal time format

-- E --

emr_annotate Annotates id-time points table
emr_char2time Convert time to character format
emr_cor Calculates correlation statistics for pairs of track expressions
emr_date2time Converts date and hour to internal time format
emr_db.connect Initializes connection with Naryn Database
emr_db.init Initializes connection with Naryn Database
emr_db.init_examples Initializes connection with Naryn Database
emr_db.ls Initializes connection with Naryn Database
emr_db.reload Reloads database
emr_db.subset Defines an ids subset
emr_db.subset.ids Returns the ids that constitute the current ids subset
emr_db.subset.info Returns information about the current subset
emr_db.unload Unload all tracks from naryn database
emr_dist Calculates distribution of track expressions
emr_download_example_data Download example database
emr_entries.get Get an entry
emr_entries.get_all Get all entries
emr_entries.ls List entries
emr_entries.reload Reload entries from disk
emr_entries.rm Remove an entry
emr_entries.rm_all Remove all entries
emr_entries.set Set an entry
emr_extract Returns evaluated track expression
emr_filter.attr.expiration Get or set attributes of a named filter
emr_filter.attr.keepref Get or set attributes of a named filter
emr_filter.attr.src Get or set attributes of a named filter
emr_filter.attr.time.shift Get or set attributes of a named filter
emr_filter.attr.val Get or set attributes of a named filter
emr_filter.clear Clear all filters from the current environment
emr_filter.create Creates a new named filter
emr_filter.create_from_name Create a filter from an automatically generated name
emr_filter.exists Checks whether the named filter exists
emr_filter.info Returns the definition of a named filter
emr_filter.ls Returns a list of named filters
emr_filter.name Generate a default name for a naryn filter
emr_filter.rm Deletes a named filter
emr_filters.info Returns the filter definition of named filters given a filter expression
emr_ids_coverage Returns ids coverage per track
emr_ids_vals_coverage Returns ids coverage per value track
emr_monthly_iterator Create an iterator that goes every year/month
emr_posix2time Convert EMR time to POSIXct
emr_quantiles Calculates quantiles of a track expression
emr_screen Finds Id-Time points that match track expression
emr_summary Calculates summary statistics of track expression
emr_time Convert time periods to internal time format
emr_time2char Convert time to character format
emr_time2date Convert from internal time to year, month, day, hour
emr_time2dayofmonth Converts time from internal format to a day of month
emr_time2hour Converts time from internal format to an hour
emr_time2month Converts time from internal format to a month
emr_time2posix Convert EMR time to POSIXct
emr_time2year Converts time from internal format to a year
emr_track.addto Adds new records to a track
emr_track.attr.export Returns attributes values of tracks
emr_track.attr.get Returns the value of the track attribute
emr_track.attr.rm Deletes a track attribute
emr_track.attr.set Assigns a value to the track attribute
emr_track.create Creates a track from a track expression
emr_track.current_db Returns a vector of db ids which have a version of the track
emr_track.dbs Returns a vector of db ids which have a version of the track
emr_track.exists Checks whether the track exists
emr_track.global.ls Returns a list of track names
emr_track.ids Returns track ids
emr_track.import Imports a track from a file or data-frame
emr_track.info Returns information about the track.
emr_track.logical.create Creates a logical track
emr_track.logical.exists Is a track logical
emr_track.logical.info Returns information about a logical track
emr_track.logical.ls Returns a list of track names
emr_track.logical.rm Deletes a logical track
emr_track.ls Returns a list of track names
emr_track.mv Moves (renames) a track
emr_track.percentile Returns track percentile of the values
emr_track.readonly Gets or sets "read-only" property of a track
emr_track.rm Deletes a track
emr_track.unique Returns track values
emr_track.user.ls Returns a list of track names
emr_track.var.get Returns value of a track variable
emr_track.var.ls Returns a list of track variables for a track
emr_track.var.rm Deletes a track variable
emr_track.var.set Assigns value to a track variable
emr_vtrack.attr.filter Get or set attributes of a virtual track
emr_vtrack.attr.func Get or set attributes of a virtual track
emr_vtrack.attr.id.map Get or set attributes of a virtual track
emr_vtrack.attr.keepref Get or set attributes of a virtual track
emr_vtrack.attr.params Get or set attributes of a virtual track
emr_vtrack.attr.src Get or set attributes of a virtual track
emr_vtrack.attr.time.shift Get or set attributes of a virtual track
emr_vtrack.clear Clear all virtual tracks from the current environment
emr_vtrack.create Creates a new virtual track
emr_vtrack.create_from_name Create a virtual track from an automatically generated name
emr_vtrack.exists Checks whether the virtual track exists
emr_vtrack.info Returns the definition of a virtual track
emr_vtrack.ls Returns a list of virtual track names
emr_vtrack.name Generate a default name for a virtual track
emr_vtrack.rm Deletes a virtual track
emr_yearly_iterator Create an iterator that goes every year/month

-- H --

hour Convert time periods to internal time format
hours Convert time periods to internal time format

-- M --

month Convert time periods to internal time format
months Convert time periods to internal time format

-- N --

naryn Toolkit for medical records data analysis

-- S --

string_to_var Create a syntactically valid variable name from a string

-- V --

var_to_string Decode a variable created by string_to_var

-- W --

week Convert time periods to internal time format
weeks Convert time periods to internal time format

-- Y --

year Convert time periods to internal time format
years Convert time periods to internal time format