| exData | Example dataset | 
| matrices | Example cluster matrices | 
| msc.depth | Check the read depth of assembled minicircles | 
| msc.heatmap | Visualization of cluster matrices | 
| msc.length | Length of minicircles | 
| msc.matrix | Build cluster matrix | 
| msc.pca | Prinicple Component Analysis based on MSC | 
| msc.quality | Check the quality of the assembly | 
| msc.richness | Minicircle Sequence Cluster richness | 
| msc.seqs | Retrieve sequences | 
| msc.similarity | Minicircle Sequence Classes similarity | 
| msc.subset | Specific Minicircle Sequence Classes | 
| msc.uc | Cluster Analyses | 
| preprocess | Filtering of minicircle sequences | 
| read.uc | Read in uc files | 
| rKOMICS | Minicircle Sequence Classes (MSC) Analyses |