Preparation, Checking and Post-Processing Data for PK/PD Modeling

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Documentation for package ‘NMdata’ version 0.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

addCor	add correlations of off-diagonal OMEGA and SIGMA elements to a parameter table
addOmegaCorr	Deprecated: use addCor. Add correlations to parameter table
addTAPD	Add time since previous dose to data, time of previous dose, most recent dose amount, cumulative number of doses, and cumulative dose amount.
cbind.NMdata	Basic arithmetic on NMdata objects
cc	Create character vectors without quotation marks
cl	Define a vector with factor levels in the same order as occurring in the vector.
colLabels	Extract column labels as defined in SAS
compareCols	Compare elements in lists with aim of combining
dimnames.NMdata	Basic arithmetic on NMdata objects
dims	Get dimensions of multiple objects
dt2mat	Convert a data.table of parameter estimates to a matrix
editCharCols	Replace strings in character character columns of a data set
egdt	Expand grid of data.tables
findCovs	Extract columns that vary within values of other columns
findVars	Extract columns that vary within values of other columns in a data.frame
flagsAssign	Assign exclusion flags to a dataset based on specified table
flagsCount	Create an overview of number of retained and discarded datapoints.
fnAppend	paste something before file name extension.
fnExtension	Change file name extension
is.NMdata	Check if an object is 'NMdata'
listMissings	List rows with missing values across multiple columns
mat2dt	upper or lower triangle or all values of a matrix as long-format
merge.NMdata	Basic arithmetic on NMdata objects
mergeCheck	Merge, order, and check resulting rows and columns.
NMcheckColnames	Compare $INPUT in control stream to column names in input data
NMcheckData	Check data for Nonmem compatibility or check control stream for data compatibility
NMdataConf	Configure default behavior of NMdata functions
NMdataOperations	Basic arithmetic on NMdata objects
NMexpandDoses	Transform repeated dosing events (ADDL/II) to individual dosing events
NMextractDataFile	Extract the data file used in a control stream
NMextractText	Versatile text extractor from Nonmem (input or output) control streams
NMgenText	Generate text for INPUT and possibly DATA sections of NONMEM control streams.
NMinfo	Get metadata from an NMdata object
NMisNumeric	Test if a variable can be interpreted by Nonmem
NMorderColumns	Standardize column order in Nonmem input data
NMreadCov	Read in data file
NMreadCsv	Read input data formatted for Nonmem
NMreadExt	Read information from Nonmem ext files
NMreadFilters	Read data filters from a NONMEM model
NMreadInits	Tabulate information from parameter sections in control streams
NMreadParsText	Read comments to parameter definitions in Nonmem control streams
NMreadPhi	Read information from Nonmem phi files
NMreadSection	Extract sections of Nonmem control streams
NMreadShk	Read Shrinkage data reported by Nonmem
NMreadSizes	Read SIZES info from a control stream
NMreadTab	Read an output table file from Nonmem
NMrelate	Relate parameter names and variables based on control stream code sections.
NMreplaceDataFile	Replace data file used in Nonmem control stream
NMscanData	Automatically find Nonmem input and output tables and organize data
NMscanInput	Find and read input data and optionally translate column names according to the $INPUT section
NMscanMultiple	Run NMscanData on multiple models and stack results
NMscanTables	Find and read all output data tables in Nonmem run
NMstamp	stamp a dataset or any other object
NMwriteData	Write dataset for use in Nonmem (and R)
NMwriteFilters	Write IGNORE/ACCEPT filters to NONMEM model
NMwriteInits	Writes a parameter values to a control stream
NMwriteSection	Replace ($)sections of a Nonmem control stream
NMwriteSizes	Create or update $SIZES in a control stream
print.summary_NMdata	print method for NMdata summaries
rbind.NMdata	Basic arithmetic on NMdata objects
renameByContents	Rename columns matching properties of data contents
summary.NMdata	summary method for NMdata objects
t.NMdata	Basic arithmetic on NMdata objects
triagSize	Calculate number of elements for matrix specification
uniquePresent	Extract unique non-missing value from vector
unNMdata	Remove NMdata class and discard NMdata meta data