| chisq_g4 | Chi Square test when genotypes are known | 
| chisq_gl4 | Chi-Sq for GL | 
| em_li | EM algorithm from Li (2011) | 
| gcount_to_gvec | Converts genotype counts to genotype vectors. | 
| gvec_to_gcount | Inverse function of 'gcount_to_gvec()'. | 
| is_valid_2 | Tests if the two parameter model is valid | 
| iter.array | Iterator over array | 
| like_gknown_2 | Likelihood under three parameter model when genotypes are known | 
| like_gknown_3 | Likelihood under three parameter model when genotypes are known | 
| like_glpknown_2 | Likelihood under three parameter model when using offspring genotypes likelihoods but parent genotypes are known. | 
| like_glpknown_3 | Likelihood under three parameter model when using offspring genotypes likelihoods but parent genotypes are known. | 
| llike_li | Objective function for 'em_li()' | 
| lrt_men_g4 | Likelihood ratio test for segregation distortion with known genotypes | 
| lrt_men_gl4 | Likelihood ratio test using genotype likelihoods. | 
| multidog_to_g | Converts multidog output to a format usable for multi_lrt() | 
| multi_lrt | Parallelized likelihood ratio test for segregation distortion. | 
| nextElem.arrayiter | Next element in an array | 
| offspring_geno | Simulates genotypes given genotype frequencies. | 
| offspring_gf_2 | Calculates offspring genotype frequencies under the two-parameter model. | 
| offspring_gf_3 | Calculates offspring genotype frequencies under the three-parameter model. | 
| otest_g | Jointly tests for segregation distortion and number of incompatible genotypes | 
| polymapr_test | Run segregation distortion tests as implemented in the polymapR package. | 
| po_gl | Generate genotype likelihoods from offspring genotypes. | 
| pvec_tet_2 | Tetraploid gamete frequencies of gametes when one parent's genotype is known | 
| pvec_tet_3 | Tetraploid gamete frequencies of gametes when one parent's genotype is known | 
| simf1g | Simulate genotype counts from F1 individuals | 
| simf1gl | Simulate genotype likelihoods of F1 individuals. | 
| simgl | Simulate genotype likelihoods from genotype counts | 
| three_to_two | Convert from three parameters to two parameters | 
| ufit | Genotype data from Cappai et al. (2020) | 
| ufit2 | Genotype data from Cappai et al. (2020) | 
| ufit3 | Genotype data from Cappai et al. (2020) |