* using log directory 'd:/Rcompile/CRANpkg/local/4.6/puremoe.Rcheck'
* using R Under development (unstable) (2025-07-26 r88458 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'puremoe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'puremoe' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'puremoe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
'source_pmc.R' 'source_pubmed.R' 'source_pubtations.R'
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s] OK
* checking Rd files ... [0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [25s] ERROR
Running examples in 'puremoe-Ex.R' failed
The error most likely occurred in:
> ### Name: get_records
> ### Title: Retrieve Data from 'NLM'/'PubMed' databases Based on PMIDs
> ### Aliases: get_records
>
> ### ** Examples
>
> pmids <- c("38136652")
> results <- get_records(pmids, endpoint = "pubmed_abstracts", cores = 1)
Error : HTTP failure: 500
NCBI/eutils101 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.239
Server: eutils101
Time: Sun Jul 27 11:29:06 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.22.27
Server: eutils201
Time: Sun Jul 27 11:29:08 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils202 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.18.165
Server: eutils202
Time: Sun Jul 27 11:29:09 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.18.165
Server: eutils201
Time: Sun Jul 27 11:29:11 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils101 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.52
Server: eutils101
Time: Sun Jul 27 11:29:12 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.239
Server: eutils201
Time: Sun Jul 27 11:29:14 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils102 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.22.27
Server: eutils102
Time: Sun Jul 27 11:29:15 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.18.165
Server: eutils201
Time: Sun Jul 27 11:29:16 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils202 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.239
Server: eutils202
Time: Sun Jul 27 11:29:18 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils202 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.52
Server: eutils202
Time: Sun Jul 27 11:29:19 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils102 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.239
Server: eutils102
Time: Sun Jul 27 11:29:20 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils102 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.22.27
Server: eutils102
Time: Sun Jul 27 11:29:22 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.18.165
Server: eutils201
Time: Sun Jul 27 11:29:23 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils201 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.19.52
Server: eutils201
Time: Sun Jul 27 11:29:25 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error : HTTP failure: 500
NCBI/eutils202 - WWW Error 500 Diagnostic
Server Error
Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:
pubmed@nlm.nih.gov - for problems with PubMed
webadmin@ncbi.nlm.nih.gov - for problems with other services
Thank you for your assistance. We will try to fix the
problem as soon as possible.
Diagnostic Information:
Error: 500
URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e f e t c h . f c g i ? d b = p u b m e d & a m p ; r e t t y p e = x m l & a m p ; r e t m o d e = & a m p ; i d = 3 8 1 3 6 6 5 2 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z
Client: 130.14.18.165
Server: eutils202
Time: Sun Jul 27 11:29:26 EDT 2025
NOTE: The above is an internal URL which may differ from the one you used to address the page.
Rev. 01/04/08
Error in UseMethod("read_xml") :
no applicable method for 'read_xml' applied to an object of class "try-error"
Calls: get_records ... FUN -> task_function -> .fetch_records ->
Execution halted
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 1 ERROR, 1 NOTE