| jti-package | jti: Junction Tree Inference | 
| asia | Asia | 
| asia2 | Asia2 | 
| bnfit_to_cpts | bnfit to cpts | 
| compile | Compile information | 
| compile.cpt_list | Compile information | 
| cpt_list | Conditional probability list | 
| cpt_list.data.frame | Conditional probability list | 
| cpt_list.list | Conditional probability list | 
| dim_names | Various getters | 
| dim_names.charge | Various getters | 
| dim_names.cpt_list | Various getters | 
| dim_names.jt | Various getters | 
| get_cliques | Return the cliques of a junction tree | 
| get_cliques.charge | Return the cliques of a junction tree | 
| get_cliques.jt | Return the cliques of a junction tree | 
| get_cliques.pot_list | Return the cliques of a junction tree | 
| get_clique_root | Return the cliques of a junction tree | 
| get_clique_root.jt | Return the cliques of a junction tree | 
| get_clique_root_idx | Return the cliques of a junction tree | 
| get_clique_root_idx.jt | Return the cliques of a junction tree | 
| get_graph | Get graph | 
| get_graph.charge | Get graph | 
| get_graph.cpt_list | Get graph | 
| get_triang_graph | Get triangulated graph | 
| has_inconsistencies | Various getters | 
| has_inconsistencies.charge | Various getters | 
| has_inconsistencies.jt | Various getters | 
| initialize | Initialize | 
| initialize.charge | Initialize | 
| jt | Junction Tree | 
| jt.charge | Junction Tree | 
| jti | jti: Junction Tree Inference | 
| jt_leaves | Query Parents or Leaves in a Junction Tree | 
| jt_leaves.jt | Query Parents or Leaves in a Junction Tree | 
| jt_nbinary_ops | Number of Binary Operations | 
| jt_nbinary_ops.triangulation | Number of Binary Operations | 
| jt_parents | Query Parents or Leaves in a Junction Tree | 
| jt_parents.jt | Query Parents or Leaves in a Junction Tree | 
| mpd | Maximal Prime Decomposition | 
| mpd.cpt_list | Maximal Prime Decomposition | 
| mpd.matrix | Maximal Prime Decomposition | 
| mpe | Most Probable Explanation | 
| mpe.jt | Most Probable Explanation | 
| names.charge | Various getters | 
| names.cpt_list | Various getters | 
| names.jt | Various getters | 
| plot.charge | A plot method for junction trees | 
| plot.jt | A plot method for junction trees | 
| pot_list | A check and extraction of clique potentials from a Markov random field to be used in the junction tree algorithm | 
| pot_list.data.frame | A check and extraction of clique potentials from a Markov random field to be used in the junction tree algorithm | 
| print.charge | A print method for compiled objects | 
| print.cpt_list | A print method for cpt lists | 
| print.jt | A print method for junction trees | 
| propagate | Propagation of junction trees | 
| propagate.jt | Propagation of junction trees | 
| query_belief | Query probabilities | 
| query_belief.jt | Query probabilities | 
| query_evidence | Query Evidence | 
| query_evidence.jt | Query Evidence | 
| send_messages | Send Messages in a Junction Tree | 
| set_evidence | Enter Evidence | 
| set_evidence.charge | Enter Evidence | 
| set_evidence.jt | Enter Evidence | 
| sim_data_from_bn | Simulate data from a Bayesian network | 
| sim_data_from_dmrf | Simulate data from a decomposable discrete markov random field | 
| triangulate | Triangulate a Bayesian network | 
| triangulate.cpt_list | Triangulate a Bayesian network |