| ActCosinor2 | Cosinor Model for Circadian Rhythmicity | 
| ActCosinor_long2 | Cosinor Model for Circadian Rhythmicity for the Whole Dataset | 
| ActExtendCosinor2 | Extended Cosinor Model for Circadian Rhythmicity | 
| ActExtendCosinor_long2 | Cosinor Model for Circadian Rhythmicity for the Whole Dataset | 
| afterggir | Main Call for Data Processing after Runing GGIR for Accelerometer Data | 
| bin_data2 | Bin data into longer windows | 
| create.postGGIR | Create a template shell script of postGGIR | 
| data.imputation | Data imputation for the cleaned data with annotation | 
| DataShrink | Annotating the merged data for all accelerometer files in the GGIR output | 
| fragmentation2 | Fragmentation Metrics | 
| fragmentation_long2 | Fragmentation Metrics for Whole Dataset | 
| ggir.datatransform | Transform the data and merge all accelerometer files in the GGIR output | 
| ggir.summary | Description of all accelerometer files in the GGIR output | 
| IS2 | Interdaily Statbility | 
| IS_long2 | Interdaily Statbility for the Whole Dataset | 
| IV2 | Intradaily Variability | 
| IV_long2 | Intradaily Variability for the Whole Dataset | 
| jive.predict2 | Modified jive.predict function (package: r.jive) | 
| PAfun | Timne Metrics for Whole Dataset | 
| pheno.plot | View phenotype variables | 
| RA2 | Relative Amplitude | 
| RA_long2 | Relative Amplitude for the Whole Datset | 
| SVDmiss2 | Modified SVDmiss function (package SpatioTemporal) | 
| Time2 | Time of A Certain activity State | 
| Time_long2 | Timne Metrics for Whole Dataset | 
| Tvol2 | Total Volumen of Activity for Whole Dataset | 
| wear_flag | Create Wear/Nonwear Flags |