Last updated on 2024-09-21 02:48:49 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| PopED | 8 | 5 | |
| xpose4 | 3 | 10 |
Current CRAN status: ERROR: 8, OK: 5
Version: 0.6.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ed_laplace_ofv.Rd: fdHess
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_multi-response_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15867 bytes
Input file size = 16737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
Output IDAT size = 14285 bytes (1582 bytes decrease)
Output file size = 14363 bytes (2374 bytes = 14.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_ODE_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24719 bytes
Input file size = 25613 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18259
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
Output IDAT size = 18172 bytes (6547 bytes decrease)
Output file size = 18250 bytes (7363 bytes = 28.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_different_dose_regimen-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66345 bytes
Input file size = 66519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
Output IDAT size = 55125 bytes (11220 bytes decrease)
Output file size = 55203 bytes (11316 bytes = 17.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/unnamed-chunk-24-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9788 bytes
Input file size = 10658 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
Output IDAT size = 7999 bytes (1789 bytes decrease)
Output file size = 8077 bytes (2581 bytes = 24.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_IOV_with_IIV-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45470 bytes
Input file size = 45608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
Output IDAT size = 41109 bytes (4361 bytes decrease)
Output file size = 41187 bytes (4421 bytes = 9.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_with_cov_matrix-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14141 bytes
Input file size = 15011 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
Output IDAT size = 12196 bytes (1945 bytes decrease)
Output file size = 12274 bytes (2737 bytes = 18.23% decrease)
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘examples.Rmd’
--- re-building ‘intro-poped.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_without_BSV-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42539 bytes
Input file size = 42677 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
Output IDAT size = 36724 bytes (5815 bytes decrease)
Output file size = 36802 bytes (5875 bytes = 13.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_with_BSV-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17208 bytes
Input file size = 18090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15397
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
Output IDAT size = 15299 bytes (1909 bytes decrease)
Output file size = 15377 bytes (2713 bytes = 15.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_optimal_design-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42239 bytes
Input file size = 42377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
Output IDAT size = 36107 bytes (6132 bytes decrease)
Output file size = 36185 bytes (6192 bytes = 14.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_efficiency_windows-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 137872 bytes
Input file size = 138142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 121576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
Output IDAT size = 120826 bytes (17046 bytes decrease)
Output file size = 120904 bytes (17238 bytes = 12.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_discrete_optimization-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42505 bytes
Input file size = 42643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
Output IDAT size = 36713 bytes (5792 bytes decrease)
Output file size = 36791 bytes (5852 bytes = 13.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/unnamed-chunk-16-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22122 bytes
Input file size = 22224 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
Output IDAT size = 17836 bytes (4286 bytes decrease)
Output file size = 17914 bytes (4310 bytes = 19.39% decrease)
--- finished re-building ‘intro-poped.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_multi-response_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15867 bytes
Input file size = 16737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
Output IDAT size = 14285 bytes (1582 bytes decrease)
Output file size = 14363 bytes (2374 bytes = 14.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_ODE_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24719 bytes
Input file size = 25613 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18259
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
Output IDAT size = 18172 bytes (6547 bytes decrease)
Output file size = 18250 bytes (7363 bytes = 28.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_different_dose_regimen-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66345 bytes
Input file size = 66519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
Output IDAT size = 55125 bytes (11220 bytes decrease)
Output file size = 55203 bytes (11316 bytes = 17.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/unnamed-chunk-24-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9788 bytes
Input file size = 10658 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
Output IDAT size = 7999 bytes (1789 bytes decrease)
Output file size = 8077 bytes (2581 bytes = 24.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_IOV_with_IIV-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45470 bytes
Input file size = 45608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
Output IDAT size = 41109 bytes (4361 bytes decrease)
Output file size = 41187 bytes (4421 bytes = 9.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_with_cov_matrix-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14141 bytes
Input file size = 15011 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
Output IDAT size = 12196 bytes (1945 bytes decrease)
Output file size = 12274 bytes (2737 bytes = 18.23% decrease)
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘examples.Rmd’
--- re-building ‘intro-poped.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_without_BSV-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42539 bytes
Input file size = 42677 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
Output IDAT size = 36724 bytes (5815 bytes decrease)
Output file size = 36802 bytes (5875 bytes = 13.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_with_BSV-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17208 bytes
Input file size = 18090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15397
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
Output IDAT size = 15299 bytes (1909 bytes decrease)
Output file size = 15377 bytes (2713 bytes = 15.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_optimal_design-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42239 bytes
Input file size = 42377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
Output IDAT size = 36107 bytes (6132 bytes decrease)
Output file size = 36185 bytes (6192 bytes = 14.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_efficiency_windows-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 137872 bytes
Input file size = 138142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 121576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
Output IDAT size = 120826 bytes (17046 bytes decrease)
Output file size = 120904 bytes (17238 bytes = 12.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_discrete_optimization-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42505 bytes
Input file size = 42643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
Output IDAT size = 36713 bytes (5792 bytes decrease)
Output file size = 36791 bytes (5852 bytes = 13.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/unnamed-chunk-16-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22122 bytes
Input file size = 22224 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
Output IDAT size = 17836 bytes (4286 bytes decrease)
Output file size = 17914 bytes (4310 bytes = 19.39% decrease)
--- finished re-building ‘intro-poped.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_multi-response_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15867 bytes
Input file size = 16737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14286
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14286
Output IDAT size = 14286 bytes (1581 bytes decrease)
Output file size = 14364 bytes (2373 bytes = 14.18% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_ODE_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24718 bytes
Input file size = 25612 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18259
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18173
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18173
Output IDAT size = 18173 bytes (6545 bytes decrease)
Output file size = 18251 bytes (7361 bytes = 28.74% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_different_dose_regimen-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66345 bytes
Input file size = 66519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55123
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55123
Output IDAT size = 55123 bytes (11222 bytes decrease)
Output file size = 55201 bytes (11318 bytes = 17.01% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/unnamed-chunk-24-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9787 bytes
Input file size = 10657 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7998
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7998
Output IDAT size = 7998 bytes (1789 bytes decrease)
Output file size = 8076 bytes (2581 bytes = 24.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_IOV_with_IIV-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45473 bytes
Input file size = 45611 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41110
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41110
Output IDAT size = 41110 bytes (4363 bytes decrease)
Output file size = 41188 bytes (4423 bytes = 9.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_with_cov_matrix-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14139 bytes
Input file size = 15009 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12194
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12194
Output IDAT size = 12194 bytes (1945 bytes decrease)
Output file size = 12272 bytes (2737 bytes = 18.24% decrease)
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘examples.Rmd’
--- re-building ‘intro-poped.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_without_BSV-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42543 bytes
Input file size = 42681 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36728
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36728
Output IDAT size = 36728 bytes (5815 bytes decrease)
Output file size = 36806 bytes (5875 bytes = 13.76% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_with_BSV-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17206 bytes
Input file size = 18088 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15887
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15393
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15294
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15294
Output IDAT size = 15294 bytes (1912 bytes decrease)
Output file size = 15372 bytes (2716 bytes = 15.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_optimal_design-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42239 bytes
Input file size = 42377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36095
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36095
Output IDAT size = 36095 bytes (6144 bytes decrease)
Output file size = 36173 bytes (6204 bytes = 14.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_efficiency_windows-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 137872 bytes
Input file size = 138142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 121576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
Output IDAT size = 120826 bytes (17046 bytes decrease)
Output file size = 120904 bytes (17238 bytes = 12.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_discrete_optimization-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42507 bytes
Input file size = 42645 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36718
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36718
Output IDAT size = 36718 bytes (5789 bytes decrease)
Output file size = 36796 bytes (5849 bytes = 13.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/unnamed-chunk-16-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22122 bytes
Input file size = 22224 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
Output IDAT size = 17836 bytes (4286 bytes decrease)
Output file size = 17914 bytes (4310 bytes = 19.39% decrease)
--- finished re-building ‘intro-poped.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_multi-response_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15867 bytes
Input file size = 16737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14286
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14286
Output IDAT size = 14286 bytes (1581 bytes decrease)
Output file size = 14364 bytes (2373 bytes = 14.18% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_ODE_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24718 bytes
Input file size = 25612 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18259
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18173
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18173
Output IDAT size = 18173 bytes (6545 bytes decrease)
Output file size = 18251 bytes (7361 bytes = 28.74% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_different_dose_regimen-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66345 bytes
Input file size = 66519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55123
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55123
Output IDAT size = 55123 bytes (11222 bytes decrease)
Output file size = 55201 bytes (11318 bytes = 17.01% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/unnamed-chunk-24-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9787 bytes
Input file size = 10657 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7998
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7998
Output IDAT size = 7998 bytes (1789 bytes decrease)
Output file size = 8076 bytes (2581 bytes = 24.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_IOV_with_IIV-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45473 bytes
Input file size = 45611 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41110
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41110
Output IDAT size = 41110 bytes (4363 bytes decrease)
Output file size = 41188 bytes (4423 bytes = 9.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_with_cov_matrix-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14139 bytes
Input file size = 15009 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12194
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12194
Output IDAT size = 12194 bytes (1945 bytes decrease)
Output file size = 12272 bytes (2737 bytes = 18.24% decrease)
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘examples.Rmd’
--- re-building ‘intro-poped.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_without_BSV-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42543 bytes
Input file size = 42681 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36728
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36728
Output IDAT size = 36728 bytes (5815 bytes decrease)
Output file size = 36806 bytes (5875 bytes = 13.76% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_with_BSV-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17206 bytes
Input file size = 18088 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15887
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15393
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15294
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15294
Output IDAT size = 15294 bytes (1912 bytes decrease)
Output file size = 15372 bytes (2716 bytes = 15.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_optimal_design-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42239 bytes
Input file size = 42377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36095
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36095
Output IDAT size = 36095 bytes (6144 bytes decrease)
Output file size = 36173 bytes (6204 bytes = 14.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_efficiency_windows-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 137872 bytes
Input file size = 138142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 121576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
Output IDAT size = 120826 bytes (17046 bytes decrease)
Output file size = 120904 bytes (17238 bytes = 12.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_discrete_optimization-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42507 bytes
Input file size = 42645 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36718
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36718
Output IDAT size = 36718 bytes (5789 bytes decrease)
Output file size = 36796 bytes (5849 bytes = 13.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/unnamed-chunk-16-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22122 bytes
Input file size = 22224 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
Output IDAT size = 17836 bytes (4286 bytes decrease)
Output file size = 17914 bytes (4310 bytes = 19.39% decrease)
--- finished re-building ‘intro-poped.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building 'examples.Rmd'
--- re-building 'intro-poped.Rmd' using rmarkdown
--- finished re-building 'intro-poped.Rmd'
SUMMARY: processing the following file failed:
'examples.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_multi-response_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15867 bytes
Input file size = 16737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14285
Output IDAT size = 14285 bytes (1582 bytes decrease)
Output file size = 14363 bytes (2374 bytes = 14.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_ODE_model-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24719 bytes
Input file size = 25613 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18259
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18172
Output IDAT size = 18172 bytes (6547 bytes decrease)
Output file size = 18250 bytes (7363 bytes = 28.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_different_dose_regimen-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66345 bytes
Input file size = 66519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55125
Output IDAT size = 55125 bytes (11220 bytes decrease)
Output file size = 55203 bytes (11316 bytes = 17.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/unnamed-chunk-24-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9788 bytes
Input file size = 10658 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7999
Output IDAT size = 7999 bytes (1789 bytes decrease)
Output file size = 8077 bytes (2581 bytes = 24.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_IOV_with_IIV-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45470 bytes
Input file size = 45608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41109
Output IDAT size = 41109 bytes (4361 bytes decrease)
Output file size = 41187 bytes (4421 bytes = 9.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/examples_files/figure-html/simulate_with_cov_matrix-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14141 bytes
Input file size = 15011 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12196
Output IDAT size = 12196 bytes (1945 bytes decrease)
Output file size = 12274 bytes (2737 bytes = 18.23% decrease)
Quitting from lines 971-988 [unnamed-chunk-46] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘examples.Rmd’
--- re-building ‘intro-poped.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_without_BSV-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42539 bytes
Input file size = 42677 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36724
Output IDAT size = 36724 bytes (5815 bytes decrease)
Output file size = 36802 bytes (5875 bytes = 13.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_with_BSV-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17208 bytes
Input file size = 18090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15397
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
Output IDAT size = 15299 bytes (1909 bytes decrease)
Output file size = 15377 bytes (2713 bytes = 15.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_optimal_design-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42239 bytes
Input file size = 42377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36107
Output IDAT size = 36107 bytes (6132 bytes decrease)
Output file size = 36185 bytes (6192 bytes = 14.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_efficiency_windows-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 137872 bytes
Input file size = 138142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 121576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 120826
Output IDAT size = 120826 bytes (17046 bytes decrease)
Output file size = 120904 bytes (17238 bytes = 12.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/simulate_discrete_optimization-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42505 bytes
Input file size = 42643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
Output IDAT size = 36713 bytes (5792 bytes decrease)
Output file size = 36791 bytes (5852 bytes = 13.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/PopED.Rcheck/vign_test/PopED/vignettes/intro-poped_files/figure-html/unnamed-chunk-16-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22122 bytes
Input file size = 22224 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17836
Output IDAT size = 17836 bytes (4286 bytes decrease)
Output file size = 17914 bytes (4310 bytes = 19.39% decrease)
--- finished re-building ‘intro-poped.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
Quitting from lines 151-174 [unnamed-chunk-6] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building 'examples.Rmd'
--- re-building 'intro-poped.Rmd' using rmarkdown
Quitting from lines 130-153 [unnamed-chunk-7] (intro-poped.Rmd)
Error: processing vignette 'intro-poped.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building 'intro-poped.Rmd'
SUMMARY: processing the following files failed:
'examples.Rmd' 'intro-poped.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 4.7.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
xpose.VPC.categorical.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64