Last updated on 2025-09-18 01:52:08 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/132s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.683, system: 0.084, elapsed: 2.759 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.360, system: 0.295, elapsed: 15.316 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.019, elapsed: 0.335 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.833, system: 0.267, elapsed: 5.309 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.007, elapsed: 0.211 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.763, system: 0.703, elapsed: 24.799 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.599, system: 0.070, elapsed: 2.581 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.195, system: 0.250, elapsed: 15.289 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.018, elapsed: 0.282 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.947, system: 0.274, elapsed: 5.858 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.009, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.629, system: 0.653, elapsed: 25.143 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.815, system: 0.101, elapsed: 3.240 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.166, system: 0.220, elapsed: 15.737 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.010, elapsed: 0.234 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.797, system: 0.199, elapsed: 7.083 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.229 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.156, system: 0.210, elapsed: 1.464 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.903, system: 0.775, elapsed: 29.035 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.454, system: 0.036, elapsed: 2.254 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.021, system: 0.083, elapsed: 14.562 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.625 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.740, system: 0.175, elapsed: 8.910 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.250 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.326, system: 0.470, elapsed: 16.997 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.543, system: 0.810, elapsed: 44.709 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.634, system: 0.077, elapsed: 2.361 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.136, system: 0.292, elapsed: 11.306 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.017, elapsed: 0.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.661, system: 0.282, elapsed: 4.670 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.007, elapsed: 0.230 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.305, system: 0.703, elapsed: 19.526 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.674, system: 0.092, elapsed: 2.407 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.137, system: 0.205, elapsed: 15.991 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.017, elapsed: 0.389 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.699, system: 0.179, elapsed: 7.873 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.007, elapsed: 0.309 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.391, system: 0.535, elapsed: 27.900 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.568, system: 0.036, elapsed: 2.611 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.933, system: 0.075, elapsed: 13.433 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.010, elapsed: 0.281 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.513, system: 0.151, elapsed: 5.109 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.011, elapsed: 0.293 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.069, system: 0.241, elapsed: 0.959 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.077, system: 0.550, elapsed: 23.728 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.506, system: 0.038, elapsed: 2.162 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.897, system: 0.068, elapsed: 11.712 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.258 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.520, system: 0.154, elapsed: 7.474 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.435 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.113, system: 0.464, elapsed: 18.266 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.020, system: 0.766, elapsed: 41.501 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64