CRAN Package Check Results for Maintainer ‘Sylvain Piry <sylvain.piry at inrae.fr>’

Last updated on 2025-08-20 02:53:06 CEST.

Package ERROR OK
mapi 2 11

Package mapi

Current CRAN status: ERROR: 2, OK: 11

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [78s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.517, system: 0.040, elapsed: 2.134 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.924, system: 0.087, elapsed: 12.165 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.181, system: 0.013, elapsed: 0.271 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.617, system: 0.187, elapsed: 4.929 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.004, elapsed: 0.260 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 14.931, system: 0.354, elapsed: 20.524 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.510, system: 0.034, elapsed: 2.651 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.926, system: 0.084, elapsed: 14.706 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.251 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.652, system: 0.158, elapsed: 6.194 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.003, elapsed: 0.247 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 14.970, system: 0.312, elapsed: 24.977 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.603, system: 0.040, elapsed: 2.837 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.951, system: 0.075, elapsed: 14.840 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.185, system: 0.010, elapsed: 0.287 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.693, system: 0.170, elapsed: 5.346 seconds] Computing values for grid cells... ... done. [user: 0.162, system: 0.003, elapsed: 0.227 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.144, system: 0.211, elapsed: 1.028 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.367, system: 0.532, elapsed: 25.506 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.515, system: 0.034, elapsed: 2.134 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.882, system: 0.077, elapsed: 12.255 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.265 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.718, system: 0.172, elapsed: 5.243 seconds] Computing values for grid cells... ... done. [user: 0.164, system: 0.004, elapsed: 0.237 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.122, system: 0.458, elapsed: 14.374 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.233, system: 0.787, elapsed: 35.445 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [79s/126s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.583, system: 0.046, elapsed: 2.240 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.003, system: 0.059, elapsed: 12.263 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.183, system: 0.012, elapsed: 0.274 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.616, system: 0.183, elapsed: 5.515 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.003, elapsed: 0.213 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.085, system: 0.322, elapsed: 21.280 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.538, system: 0.032, elapsed: 1.925 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.080, system: 0.070, elapsed: 14.454 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.306 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.587, system: 0.148, elapsed: 4.771 seconds] Computing values for grid cells... ... done. [user: 0.169, system: 0.005, elapsed: 0.215 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.086, system: 0.292, elapsed: 22.433 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.527, system: 0.033, elapsed: 1.959 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.094, system: 0.055, elapsed: 12.877 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.188, system: 0.010, elapsed: 0.280 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.583, system: 0.157, elapsed: 5.505 seconds] Computing values for grid cells... ... done. [user: 0.177, system: 0.014, elapsed: 0.264 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.079, system: 0.237, elapsed: 0.985 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.290, system: 0.541, elapsed: 22.784 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.464, system: 0.026, elapsed: 2.116 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.027, system: 0.045, elapsed: 19.980 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.449 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.618, system: 0.157, elapsed: 8.630 seconds] Computing values for grid cells... ... done. [user: 0.173, system: 0.004, elapsed: 0.378 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.395, system: 0.444, elapsed: 20.218 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.504, system: 0.708, elapsed: 53.127 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64